HODGKIN HUXLEY CODE
The next version called HH4.m has been edited to format latex markup better on the MAC (Thanks to William Mau) , and will probably also work on other OS's, so I suggest using HH4.m for homework.
PARAMETER GUI BUILDER
Following files were downloaded from the mathworks user contributed site, written by Stefan Bleeck at Cambridge (UK): http://www.m]]athworks.com/matlabcentral/fileexchange/loadFile.do?objectId=5615&objectType=file
Parsing and Plotting SWC files
Plot graph from incidence matrix and geometry array:gplot3.m This code is a small modification from matlabs gplot command that allows printing of a 3D dendritic tree. It is called by importSWC.m (below).
Parse swc input into matlab:importSWC.m This file reads standard SWC morphology data into matlab, and constructs an adjacency matrix and geometry file suitable for visualization with gplot and gplot3. NOTE: You will need to copy l24a.swc (next entry) into your working directory for importSWC.m to run (and, gplot3.m above).
ORIGINAL JOURNAL ARTICLE DESCRIBING l24a: turner1995l24a.pdf
Example swc data file: l24a.swc
Matlab Code for Compartmental Modeling
Unbranched passive cable:unbranched_cable.m
Branched passive cable:branched_cable.m
Quadratic (IZHIKEVITCH) Integrate and Fire Model
Quadratic integrate and fire model: IZHIKEVITCH_2003_figure1.m
Strang Version of Circuit Theory
Note: matlab publish to HTML is demonstrated in these m files.
These files are a brief tutorial in Strang's Linear Algebra method for circuit theory, demonstrated with a Voltage Divider and an RC circuit.