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HODGKIN HUXLEY CODE

HH3.m

The next version called HH4.m has been edited to format latex markup better on the MAC (Thanks to William Mau) , and will probably also work on other OS's, so I suggest using HH4.m for homework.

HH4.m

PARAMETER GUI BUILDER

Following files were downloaded from the mathworks user contributed site, written by Stefan Bleeck at Cambridge (UK): http://www.m]]athworks.com/matlabcentral/fileexchange/loadFile.do?objectId=5615&objectType=file

NOTE: You should use the version here, which has a few bug corrections (ELS): mfiles.tar.gz The html manual is contained in paramter_docs.tar.gz

Parsing and Plotting SWC files

Plot graph from incidence matrix and geometry array:gplot3.m This code is a small modification from matlabs gplot command that allows printing of a 3D dendritic tree. It is called by importSWC.m (below).

Parse swc input into matlab:importSWC.m This file reads standard SWC morphology data into matlab, and constructs an adjacency matrix and geometry file suitable for visualization with gplot and gplot3. NOTE: You will need to copy l24a.swc (next entry) into your working directory for importSWC.m to run (and, gplot3.m above).

ORIGINAL JOURNAL ARTICLE DESCRIBING l24a: turner1995l24a.pdf

Example swc data file: l24a.swc

Matlab Code for Compartmental Modeling

Unbranched passive cable:unbranched_cable.m

Branched passive cable:branched_cable.m

Quadratic (IZHIKEVITCH) Integrate and Fire Model

Quadratic integrate and fire model: IZHIKEVITCH_2003_figure1.m

Strang Version of Circuit Theory

Note: matlab publish to HTML is demonstrated in these m files.

These files are a brief tutorial in Strang's Linear Algebra method for circuit theory, demonstrated with a Voltage Divider and an RC circuit.

Strang Voltage Divider Example

Strang RC Circuit Example


2016-12-13 18:05